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Perform GWAS with proxy information on family case-control status (GWAX)

GWAX.Rd

This function uses proxy information on case-control status along with genotype data to find the likelihood that SNPs are causal. Information on parent case-control status must be included.

Usage

GWAX(rds.obj)

Arguments

rds.obj

A list object with an FBM.code256 and accompanying FAM and MAP tibbles. Must contain case-control status for parents in FAM.

Value

A list containing GWAS data and a vector of proxy status for each genotype.